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Strain Issues

Strain Release Issues
BRC20498 20210803 Isotype BRC20498, only two strains, do not know what location is correct
ECA280 20210803 Does not genetically map with other isolates from the same apple
ECA1146 20210803 Possibly contaminated, heterozygous sample was sequenced
ECA1503 20210803 Possibly contaminated, heterozygous sample was sequenced
ECA3706 20250626 Earlier resend and sequence of JU793, matched, still does not match geography of closely related strains
ECA4377 20210803 Matches other sent copies of this strain (JU726) but still does not match geography
ECA4378 20210803 Matches other sent copies of this strain (JU793, ECA3706) but still does not match geography
ECA4383 20210803 Resend and sequence of JU1914, matched, unclear collection location
ECA4403 20210803 Resend and sequence of JU3272, matched, unclear collection location
ECA4405 20210803 Resend and sequence of JU3420, matched, unclear collection location
EG6268 20210803 Outlier in isotype EG6268, which will be renamed after removal
EG6269 20210803 Outlier in isotype EG6268, which will be renamed after removal
EG6270 20210803 Outlier in isotype EG6268, which will be renamed after removal
JU356 20210803 Possibly contaminated, heterozygous sample was sequenced
JU726 20210803 Matches other sent copies of this strain (ECA4377) but still does not match geography
JU793 20210803 Matches other sent copies of this strain (ECA4378, ECA3706) but still does not match geography
JU1257 20210803 Did not match resend ECA4380
JU1344 20210803 Did not match resend ECA4381
JU1345 20210803 Still matches resends of JU726, JU793, and JU1344; collection location is unclear
JU1376 20210803 Did not match resend ECA4382 or geographic area
JU1914 20210803 Did match resend ECA4383 but also matched JU2506, JU2517 and JU2569, unclear collection location
JU2138 20210803 Did not match resend ECA4385
JU2506 20210803 Matched JU1914-resend ECA4383, JU1914, JU2517 and JU2569, unclear collection location
JU2517 20210803 Matched JU1914-resend ECA4383, JU1914, JU2506 and JU2569, unclear collection location
JU2533 20210803 Did not match resend ECA4386
JU2569 20210803 Matched JU1914-resend ECA4383, JU1914, JU2506 and JU2517, unclear collection location
JU2573 20210803 Did not match resend ECA4387
JU2597 20210803 Did not match resend ECA4388
JU2747 20210803 Did not match resend ECA4390
JU2753 20210803 Did not match resend ECA4391
JU2767 20210803 Did not match resend ECA4392
JU2780 20210803 Did not match resend ECA4394
JU2781 20210803 Did not match resend ECA4395
JU2791 20210803 Did not match resend ECA4396
JU2801 20210803 Did not match resend ECA4397
JU2814 20210803 Did not match resend ECA4398
JU3204 20210803 Did not match resend ECA4402
JU3272 20210803 Did match resend ECA4403 but also matched JU3273, JU3420 and JU3422, unclear collection location
JU3273 20210803 Matched JU3272-resend ECA4403, JU3272, JU3420 and JU3422, unclear collection location
JU3420 20210803 Did match resend ECA4405 but also matched JU3272, JU3273 and JU3422, unclear collection location
JU3422 20210803 Matched JU3420-resend ECA4405, JU3272, JU3273 and JU3420, unclear collection location
JU4041 20210803 Isotype QG2849, only two strains, do not know what location is correct
JU4099 20210803 Isotype BRC20498, only two strains, do not know what location is correct
MY681 20210803 Possibly contaminated, heterozygous sample was sequenced
NIC398 20210803 Outlier in isotype NIC174
NIC561 20210803 Isotype NIC561, only two strains, do not know what location is correct
NIC906 20210803 Isotype NIC561, only two strains, do not know what location is correct
QG106 20210803 Outlier in isotype NIC174
QG107 20210803 Outlier in isotype NIC174
QG108 20210803 Outlier in isotype NIC174
QG109 20210803 Outlier in isotype NIC174
QG110 20210803 Outlier in isotype NIC174
QG111 20210803 Outlier in isotype NIC174
QG112 20210803 Outlier in isotype NIC174
QG113 20210803 Outlier in isotype NIC174
QG114 20210803 Outlier in isotype NIC174
QG115 20210803 Outlier in isotype NIC174
QG116 20210803 Outlier in isotype NIC174
QG117 20210803 Outlier in isotype NIC174
QG118 20210803 Outlier in isotype NIC174
QG119 20210803 Outlier in isotype NIC174
QG120 20210803 Outlier in isotype NIC174
QG121 20210803 Outlier in isotype NIC174
QG580 20210803 Outlier in isotype NIC60
QG2849 20210803 Isotype QG2849, only two strains, do not know what location is correct
YR88 20210803 Outlier in isotype EG6268, which will be renamed after removal
CB3191 20160408 Identical to N2, McGrath et al. 2009
CB3192 20160408 Identical to N2, McGrath et al. 2009
CB3193 20160408 Identical to N2, McGrath et al. 2009
CB3194 20160408 Identical to N2, McGrath et al. 2009
CB3195 20160408 Identical to N2, McGrath et al. 2009
CB4507 20160408 Identical to N2, McGrath et al. 2009, Likely dauer mutant from N2 screen
CB4555 20160408 N2xCB4851 recombinant, misfrozen as a wild isolate, McGrath et al. 2009
DH424 20160408 N2xCB4851 recombinant, misfrozen as a wild isolate, McGrath et al. 2009
DR1349 20160408 N2xCB4851 recombinant, misfrozen as a wild isolate, McGrath et al. 2009
ECA244 20160408 WGS identical to N2
ECA252 20160408 By WGS, this strain is a recombinant between N2 and CB4851.
ECA339 20170531 By WGS, this strain is the same as ECA252. It is a recombinant between N2 and CB4851.
JU1893 20231213 WGS aligns as C. briggsae
JU2461 20240129 WGS aligns as C. briggsae
LSJ1 20160408 Strain derivative highly related to N2 but cultured in high-density liquid culture, not a wild isolate
PX174 20160408 WGS shows identity with RC301, Andersen et al. 2012
PX176 20160408 Identical to N2, McGrath et al. 2009
SOW17 20250331 Most likely a contaminant of a European strain; probably a WN strain
SOW19 20250331 Most likely an N2 contaminant
TR388 20160408 Identical to N2, McGrath et al. 2009
TR389 20160408 Identical to N2, McGrath et al. 2009
TR403 20160408 N2xCB4851 recombinant, misfrozen as a wild isolate, McGrath et al. 2009