Cited By

The following publications have cited CaeNDR:

Natural variation in the Caenorhabditis elegans egg-laying circuit modulates an intergenerational fitness trade-off
Mignerot L, Gimond C, Bolelli L, Bouleau C, Sandjak A, Boulin T, Braendle C,
( 2024 Apr 2 ) eLife

The impact of FASTQ and alignment read order on structural variant calling from long-read sequencing data
Lesack KJ, Wasmuth JD,
( 2024 ) PeerJ

Role of UDP-Glycosyltransferase (ugt) Genes in Detoxification and Glycosylation of 1-Hydroxyphenazine (1-HP) in Caenorhabditis elegans
Asif MZ, Nocilla KA, Ngo L, Shah M, Smadi Y, Hafeez Z, Parnes M, Manson A, Glushka JN, Leach FE 3rd, Edison AS,
( 2024 Apr 15 ) Chemical research in toxicology

Getting around the roundworms: Identifying knowledge gaps and research priorities for the ascarids
Wolstenholme AJ, Andersen EC, Choudhary S, Ebner F, Hartmann S, Holden-Dye L, Kashyap SS, Krücken J, Martin RJ, Midha A, Nejsum P, Neveu C, Robertson AP, von Samson-Himmelstjerna G, Walker R, Wang J, Whitehead BJ, Williams PDE,
( 2024 ) Advances in parasitology

Environmental radiation exposure at Chornobyl has not systematically affected the genomes or chemical mutagen tolerance phenotypes of local worms
Tintori SC, Çağlar D, Ortiz P, Chyzhevskyi I, Mousseau TA, Rockman MV,
( 2024 Mar 12 ) Proceedings of the National Academy of Sciences of the United States of America

Genetic variation in parasite avoidance, yet no evidence for constitutive fitness costs
Amoroso CR, Shepard LL, Gibson AK,
( 2024 Feb 28 ) Evolution; international journal of organic evolution

Patterns of Genomic Diversity in a Fig-Associated Close Relative of Caenorhabditis elegans
Woodruff GC, Willis JH, Phillips PC,
( 2024 Feb 1 ) Genome biology and evolution

Young duplicate genes show developmental stage- and cell type-specific expression and function in Caenorhabditis elegans
Ma F, Lau CY, Zheng C,
( 2024 Jan 10 ) Cell genomics

A suppressor screen in C. elegans identifies a multiprotein interaction that stabilizes the synaptonemal complex
Kursel LE, Martinez JEA, Rog O,
( 2023 Dec 12 ) Proceedings of the National Academy of Sciences of the United States of America

rec-1 loss of function increases recombination in the central gene clusters at the expense of autosomal pairing centers
Parée T, Noble L, Ferreira Gonçalves J, Teotónio H,
( 2024 Mar 6 ) Genetics

rec-1 loss of function increases recombination in the central gene clusters at the expense of autosomal pairing centers
Parée T, Noble L, Gonçalves JF, Teotónio H,
( 2023 Nov 24 ) Genetics

Genome-wide association and environmental suppression of the mortal germline phenotype of wild C. elegans
Frézal L, Saglio M, Zhang G, Noble L, Richaud A, Félix MA,
( 2023 Dec 6 ) EMBO reports

Nucleus-independent transgenerational small RNA inheritance in Caenorhabditis elegans
Rieger I, Weintraub G, Lev I, Goldstein K, Bar-Zvi D, Anava S, Gingold H, Shaham S, Rechavi O,
( 2023 Oct 27 ) Science advances

A toxin-antidote selfish element increases fitness of its host
Long L, Xu W, Valencia F, Paaby AB, McGrath PT,
( 2023 Oct 24 ) eLife

Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains
Chou HT, Valencia F, Alexander JC, Bell AD, Deb D, Pollard DA, Paaby AB,
( 2024 Jan 3 ) Genetics

CaeNDR, the Caenorhabditis Natural Diversity Resource
Crombie TA, McKeown R, Moya ND, Evans KS, Widmayer SJ, LaGrassa V, Roman N, Tursunova O, Zhang G, Gibson SB, Buchanan CM, Roberto NM, Vieira R, Tanny RE, Andersen EC,
( 2024 Jan 5 ) Nucleic acids research

Canalisation and plasticity on the developmental manifold of Caenorhabditis elegans
Jordan DJ, Miska EA,
( 2023 Nov 9 ) Molecular systems biology

Effect of recombination on genetic diversity of Caenorhabditis elegans
Hwang HY, Wang J,
( 2023 Sep 30 ) Scientific reports

Evolutionarily conserved behavioral plasticity enables context-dependent mating in C. elegans
Susoy V, Samuel ADT,
( 2023 Oct 23 ) Current biology : CB

Moderate heat stress-induced sterility is due to motility defects and reduced mating drive in Caenorhabditis elegans males
Sepulveda NB, Chen D, Petrella LN,
( 2023 Oct 15 ) The Journal of experimental biology

Similarities in the induction of the intracellular pathogen response in Caenorhabditis elegans and the type I interferon response in mammals
Lažetić V, Batachari LE, Russell AB, Troemel ER,
( 2023 Nov ) BioEssays : news and reviews in molecular, cellular and developmental biology

Establishment of Wild-Derived Strains of Japanese Quail (Coturnix japonica) in Field and Laboratory Experiments
Goto T, Konno S, Konno M,
( 2023 Aug 2 ) Biology

Computational analysis of variation in C. elegans ugts
Asif MZ, Benveniste MC, Chism KD, Levin AL, Lanier D, Watkins RE, Taujale R, Tucker N, Edison AS,
( 2023 ) microPublication biology

Identification of a spontaneously arising variant affecting thermotaxis behavior in a recombinant inbred Caenorhabditis elegans line
Yeon J, Porwal C, McGrath PT, Sengupta P,
( 2023 Sep 30 ) G3 (Bethesda, Md.)

Praziquantel inhibits Caenorhabditis elegans development and species-wide differences might be cct-8-dependent
Wit J, Dilks CM, Zhang G, Guisbert KSK, Zdraljevic S, Guisbert E, Andersen EC,
( 2023 ) PloS one

Evolutionary codependency: insights into the mitonuclear interaction landscape from experimental and wild Caenorhabditis nematodes
Estes S, Dietz ZP, Katju V, Bergthorsson U,
( 2023 Aug ) Current opinion in genetics & development

A robotic system for automated genetic manipulation and analysis of Caenorhabditis elegans
Li Z, Fouad AD, Bowlin PD, Fan Y, He S, Chang MC, Du A, Teng C, Kassouni A, Ji H, Raizen DM, Fang-Yen C,
( 2023 Jul ) PNAS nexus

Environmental radiation exposure at Chornobyl has not systematically affected the genomes or mutagen tolerance phenotypes of local worms
Tintori SC, Çağlar D, Ortiz P, Chyzhevskyi I, Mousseau TA, Rockman MV,
( 2023 May 30 ) bioRxiv : the preprint server for biology

Natural allelic variation modifies acute ethanol response phenotypes in wild strains of C. elegans
van Wijk MH, Davies AG, Sterken MG, Mathies LD, Quamme EC, Blackwell GG, Riksen JAG, Kammenga JE, Bettinger JC,
( 2023 Jun 25 ) Alcohol, clinical & experimental research

Natural genetic variation in the pheromone production of C. elegans
Lee D, Fox BW, Palomino DF, Panda O, Tenjo FJ, Koury EJ, Evans KS, Stevens L, Rodrigues PR, Kolodziej AR, Schroeder FC, Andersen EC,
( 2023 Jun 27 ) Proceedings of the National Academy of Sciences of the United States of America

A QTL on chromosome IV explains a natural variation of QR.pap final position in Caenorhabditis elegans
Dubois C, Félix MA,
( 2023 ) microPublication biology

Beyond the reference: gene expression variation and transcriptional response to RNA interference in Caenorhabditis elegans
Bell AD, Chou HT, Valencia F, Paaby AB,
( 2023 Aug 9 ) G3 (Bethesda, Md.)

Higher-order epistasis shapes natural variation in germ stem cell niche activity
Fausett SR, Sandjak A, Billard B, Braendle C,
( 2023 May 17 ) Nature communications

The Promise of an Evolutionary Perspective of Alcohol Consumption
Clites BL, Hofmann HA, Pierce JT,
( 2023 ) Neuroscience insights

Variation in anthelmintic responses are driven by genetic differences among diverse C. elegans wild strains
Shaver AO, Wit J, Dilks CM, Crombie TA, Li H, Aroian RV, Andersen EC,
( 2023 Apr 3 ) PLoS pathogens

Argentine ant extract induces an osm-9 dependent chemotaxis response in C. elegans
Alfonso SA, Arango Sumano D, Bhatt DA, Cullen AB, Hajian CM, Huang W, Jaeger EL, Li E, Maske AK, Offenberg EG, Ta V, Whiting WW, Adebogun GT, Bachmann AE, Callan AA, Khan U, Lewis AR, Pollock AC, Ramirez D, Bradon N, Fiocca K, Cote LE, Sallee MD, McKinney J, O'Connell LA,
( 2023 ) microPublication biology

The potential of integrating human and mouse discovery platforms to advance our understanding of cardiometabolic diseases
Jurrjens AW, Seldin MM, Giles C, Meikle PJ, Drew BG, Calkin AC,
( 2023 Mar 31 ) eLife

Interplay Between Polymorphic Short Tandem Repeats and Gene Expression Variation in Caenorhabditis elegans
Zhang G, Andersen EC,
( 2023 Apr 4 ) Molecular biology and evolution

An organismal understanding of C. elegans innate immune responses, from pathogen recognition to multigenerational resistance
Tran TD, Luallen RJ,
( 2023 Mar 23 ) Seminars in cell & developmental biology

High-throughput phenotyping of infection by diverse microsporidia species reveals a wild C. elegans strain with opposing resistance and susceptibility traits
Mok C, Xiao MA, Wan YC, Zhao W, Ahmed SM, Luallen RJ, Reinke AW,
( 2023 Mar ) PLoS pathogens

Heritable Cas9-induced nonhomologous recombination in C. elegans
Zdraljevic S, Walter-McNeill L, Marquez H, Kruglyak L,
( 2023 ) microPublication biology

Genome Size Changes by Duplication, Divergence, and Insertion in Caenorhabditis Worms
Adams PE, Eggers VK, Millwood JD, Sutton JM, Pienaar J, Fierst JL,
( 2023 Mar 4 ) Molecular biology and evolution

Cas9-induced nonhomologous recombination in C. elegans
Zdraljevic S, Walter-McNeill L, Marquez H, Kruglyak L,
( 2023 Jan 20 ) bioRxiv : the preprint server for biology

Different structural variant prediction tools yield considerably different results in Caenorhabditis elegans
Lesack K, Mariene GM, Andersen EC, Wasmuth JD,
( 2022 ) PloS one

Variation in mutational (co)variances
Mallard F, Noble L, Baer CF, Teotónio H,
( 2023 Feb 9 ) G3 (Bethesda, Md.)

Inheritance of paternal DNA damage by histone-mediated repair restriction
Wang S, Meyer DH, Schumacher B,
( 2022 Dec 21 ) Nature

A role for worm cutl-24 in background- and parent-of-origin-dependent ER stress resistance
Wang W, Flury AG, Rodriguez AT, Garrison JL, Brem RB,
( 2022 Dec 20 ) BMC genomics

An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics
Shaver AO, Garcia BM, Gouveia GJ, Morse AM, Liu Z, Asef CK, Borges RM, Leach FE 3rd, Andersen EC, Amster IJ, Fernández FM, Edison AS, McIntyre LM,
( 2022 ) Frontiers in molecular biosciences

Characterization of larval growth in C. elegans cuticle mutants
Nyaanga J, Shirman S, Mangan NM, Andersen EC,
( 2022 ) microPublication biology

Natural variation in C. elegans short tandem repeats
Zhang G, Wang Y, Andersen EC,
( 2022 Oct ) Genome research

Recurrent but Short-Lived Duplications of Centromeric Proteins in Holocentric Caenorhabditis Species
Caro L, Raman P, Steiner FA, Ailion M, Malik HS,
( 2022 Oct 7 ) Molecular biology and evolution

Intrinsic base substitution patterns in diverse species reveal links to cancer and metabolism
Gelova SP, Doherty KN, Alasmar S, Chan K,
( 2022 Nov 1 ) Genetics

C. elegans toxicant responses vary among genetically diverse individuals
Widmayer SJ, Crombie TA, Nyaanga JN, Evans KS, Andersen EC,
( 2022 Sep ) Toxicology

Bergerac strains of Caenorhabditis elegans revisited: expansion of Tc1 elements imposes a significant genomic and fitness cost
Daigle AT, Deiss TC, Melde RH, Bergthorsson U, Katju V,
( 2022 Nov 4 ) G3 (Bethesda, Md.)

Linkage mapping reveals loci that underlie differences in Caenorhabditis elegans growth
Nyaanga J, Andersen EC,
( 2022 Sep 30 ) G3 (Bethesda, Md.)

Single-molecule FISH in C. elegans embryos reveals early embryonic expression dynamics of par-2 , lgl-1 and chin-1 and possible differences between hyper-diverged strains
Kaul S, Chou HT, Charles S, Aubry G, Lu H, Paaby AB,
( 2022 ) microPublication biology

Caenorhabditis nematodes colonize ephemeral resource patches in neotropical forests
Sloat SA, Noble LM, Paaby AB, Bernstein M, Chang A, Kaur T, Yuen J, Tintori SC, Jackson JL, Martel A, Salome Correa JA, Stevens L, Kiontke K, Blaxter M, Rockman MV,
( 2022 Jul ) Ecology and evolution

C. elegans as a model for inter-individual variation in metabolism
Fox BW, Ponomarova O, Lee YU, Zhang G, Giese GE, Walker M, Roberto NM, Na H, Rodrigues PR, Curtis BJ, Kolodziej AR, Crombie TA, Zdraljevic S, Yilmaz LS, Andersen EC, Schroeder FC, Walhout AJM,
( 2022 Jul ) Nature

Using population selection and sequencing to characterize natural variation of starvation resistance in C. elegans
Webster AK, Chitrakar R, Powell M, Chen J, Fisher K, Tanny RE, Stevens L, Evans K, Wei A, Antoshechkin I, Andersen EC, Baugh LR,
( 2022 Jun 21 ) eLife

The impact of species-wide gene expression variation on Caenorhabditis elegans complex traits
Zhang G, Roberto NM, Lee D, Hahnel SR, Andersen EC,
( 2022 Jun 16 ) Nature communications

An automated approach to quantify chemotaxis index in C. elegans
Crombie TA, Chikuturudzi C, Cook DE, Andersen EC,
( 2022 ) microPublication biology

Evaluating the power and limitations of genome-wide association studies in C. elegans
Widmayer SJ, Evans KS, Zdraljevic S, Andersen EC,
( 2022 May 10 ) G3 (Bethesda, Md.)

Intraspecific de novo gene birth revealed by presence-absence variant genes in Caenorhabditis elegans
Lee BY, Kim J, Lee J,
( 2022 Jun ) NAR genomics and bioinformatics

( nan ) nan

Megapixel camera arrays enable high-resolution animal tracking in multiwell plates
Barlow IL, Feriani L, Minga E, McDermott-Rouse A, O'Brien TJ, Liu Z, Hofbauer M, Stowers JR, Andersen EC, Ding SS, Brown AEX,
( 2022 Mar 23 ) Communications biology

Isolating Caenorhabditis elegans from the Natural Habitat
Gimond C, Poullet N, Braendle C,
( 2022 ) Methods in molecular biology (Clifton, N.J.)

Mutation, selection, and the prevalence of the Caenorhabditis elegans heat-sensitive mortal germline phenotype
Saber S, Snyder M, Rajaei M, Baer CF,
( 2022 May 6 ) G3 (Bethesda, Md.)

"Escalibur"-A practical pipeline for the de novo analysis of nucleotide variation in nonmodel eukaryotes
Korhonen PK, Shaban B, Faux NG, Kinkar L, Chang BCH, Wang D, Yang B, Young ND, Gasser RB,
( 2022 Feb 18 ) Molecular ecology resources

Rapid Isolation of Wild Nematodes by Baermann Funnel
Tintori SC, Sloat SA, Rockman MV,
( 2022 Jan 31 ) Journal of visualized experiments : JoVE

Natural genetic variation as a tool for discovery in Caenorhabditis nematodes
Andersen EC, Rockman MV,
( 2022 Jan 4 ) Genetics

Genetic diversity estimates for the Caenorhabditis Intervention Testing Program screening panel
Teterina AA, Coleman-Hulbert AL, Banse SA, Willis JH, Perez VI, Lithgow GJ, Driscoll M, Phillips PC,
( 2022 ) microPublication biology

An intestinally secreted host factor promotes microsporidia invasion of C. elegans
Tamim El Jarkass H, Mok C, Schertzberg MR, Fraser AG, Troemel ER, Reinke AW,
( 2022 Jan 7 ) eLife

Sirtuins and Autophagy in Age-Associated Neurodegenerative Diseases: Lessons from the C. elegans Model
Naseer A, Mir SS, Takacs-Vellai K, Nazir A,
( 2021 Nov 12 ) International journal of molecular sciences

Variation in copper sensitivity between laboratory and wild strains of Caenorhabditis elegans
Heaton A, Milligan E, Faulconer E, Allen A, Nguyen T, Weir SM, Glaberman S,
( 2022 Jan ) Chemosphere

easyFulcrum: An R package to process and analyze ecological sampling data generated using the Fulcrum mobile application
Di Bernardo M, Crombie TA, Cook DE, Andersen EC,
( 2021 ) PloS one

Natural variation in reproductive timing and X-chromosome nondisjunction in Caenorhabditis elegans
Lim J, Kim J, Lee J,
( 2021 Dec 8 ) G3 (Bethesda, Md.)

Deciphering complex genome rearrangements in C. elegans using short-read whole genome sequencing
Maroilley T, Li X, Oldach M, Jean F, Stasiuk SJ, Tarailo-Graovac M,
( 2021 Sep 14 ) Scientific reports

Mask R-CNN Based C. Elegans Detection with a DIY Microscope
Fudickar S, Nustede EJ, Dreyer E, Bornhorst J,
( 2021 Jul 30 ) Biosensors

Mutability of mononucleotide repeats, not oxidative stress, explains the discrepancy between laboratory-accumulated mutations and the natural allele-frequency spectrum in C. elegans
Rajaei M, Saxena AS, Johnson LM, Snyder MC, Crombie TA, Tanny RE, Andersen EC, Joyner-Matos J, Baer CF,
( 2021 Sep ) Genome research

The role of the Cer1 transposon in horizontal transfer of transgenerational memory
Moore RS, Kaletsky R, Lesnik C, Cota V, Blackman E, Parsons LR, Gitai Z, Murphy CT,
( 2021 Sep 2 ) Cell

From QTL to gene: C. elegans facilitates discoveries of the genetic mechanisms underlying natural variation
Evans KS, van Wijk MH, McGrath PT, Andersen EC, Sterken MG,
( 2021 Jul 3 ) Trends in genetics : TIG

Gaining an understanding of behavioral genetics through studies of foraging in Drosophila and learning in C. elegans
Reiss AP, Rankin CH,
( 2021 Jun 20 ) Journal of neurogenetics

Cryptic genetic variation in a heat shock protein modifies the outcome of a mutation affecting epidermal stem cell development in C. elegans
Koneru SL, Hintze M, Katsanos D, Barkoulas M,
( 2021 May 31 ) Nature communications

Natural genetic variation drives microbiome selection in the Caenorhabditis elegans gut
Zhang F, Weckhorst JL, Assié A, Hosea C, Ayoub CA, Khodakova AS, Cabrera ML, Vidal Vilchis D, Félix MA, Samuel BS,
( 2021 Jun 21 ) Current biology : CB

Fast genetic mapping using insertion-deletion polymorphisms in Caenorhabditis elegans
Hwang HY, Wang J,
( 2021 May 26 ) Scientific reports

Behavioral fingerprints predict insecticide and anthelmintic mode of action
McDermott-Rouse A, Minga E, Barlow I, Feriani L, Harlow PH, Flemming AJ, Brown AEX,
( 2021 May ) Molecular systems biology

Natural variation in fecundity is correlated with species-wide levels of divergence in Caenorhabditis elegans
Zhang G, Mostad JD, Andersen EC,
( 2021 May 13 ) G3 (Bethesda, Md.)

Revealing the antiaging effects of cereal- and food oil-derived active substances by a Caenorhabditis elegans model
Xu D, Lin Q, Wu W, Wu Y, Liang Y,
( 2021 Apr 21 ) Food & function

Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes
Durham TJ, Daza RM, Gevirtzman L, Cusanovich DA, Bolonduro O, Noble WS, Shendure J, Waterston RH,
( 2021 Oct ) Genome research

Natural variation in Caenorhabditis elegans responses to the anthelmintic emodepside
Wit J, Rodriguez BC, Andersen EC,
( 2021 Apr 17 ) International journal for parasitology. Drugs and drug resistance

Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans
Lee D, Zdraljevic S, Stevens L, Wang Y, Tanny RE, Crombie TA, Cook DE, Webster AK, Chirakar R, Baugh LR, Sterken MG, Braendle C, Félix MA, Rockman MV, Andersen EC,
( 2021 Jun ) Nature ecology & evolution

Two novel loci underlie natural differences in Caenorhabditis elegans abamectin responses
Evans KS, Wit J, Stevens L, Hahnel SR, Rodriguez B, Park G, Zamanian M, Brady SC, Chao E, Introcaso K, Tanny RE, Andersen EC,
( 2021 Mar ) PLoS pathogens

Large genetic diversity and strong positive selection in F-box and GPCR genes among the wild isolates of Caenorhabditis elegans
Ma F, Lau CY, Zheng C,
( 2021 May 7 ) Genome biology and evolution

Gene-level quantitative trait mapping in Caenorhabditis elegans
Noble LM, Rockman MV, Teotónio H,
( 2021 Feb 9 ) G3 (Bethesda, Md.)

C. elegans discriminates colors to guide foraging
Ghosh DD, Lee D, Jin X, Horvitz HR, Nitabach MN,
( 2021 Mar 5 ) Science (New York, N.Y.)

Extensive non-redundancy in a recently duplicated developmental gene family
Baker EA, Gilbert SPR, Shimeld SM, Woollard A,
( 2021 Mar 1 ) BMC ecology and evolution

Xenobiotic metabolism and transport in Caenorhabditis elegans
Hartman JH, Widmayer SJ, Bergemann CM, King DE, Morton KS, Romersi RF, Jameson LE, Leung MCK, Andersen EC, Taubert S, Meyer JN,
( 2021 Feb 17 ) Journal of toxicology and environmental health. Part B, Critical reviews

Temporally regulated cell migration is sensitive to variation in body size
Dubois C, Gupta S, Mugler A, Félix MA,
( 2021 Mar 5 ) Development (Cambridge, England)

The population genomics of adaptive loss of function
Monroe JG, McKay JK, Weigel D, Flood PJ,
( 2021 Mar ) Heredity

A single-nucleotide change underlies the genetic assimilation of a plastic trait
Vigne P, Gimond C, Ferrari C, Vielle A, Hallin J, Pino-Querido A, El Mouridi S, Mignerot L, Frøkjær-Jensen C, Boulin T, Teotónio H, Braendle C,
( 2021 Feb ) Science advances

Complementary Approaches with Free-living and Parasitic Nematodes to Understanding Anthelmintic Resistance
Wit J, Dilks CM, Andersen EC,
( 2020 Dec 12 ) Trends in parasitology

Caenorhabditis elegans in anthelmintic research - Old model, new perspectives
Hahnel SR, Dilks CM, Heisler I, Andersen EC, Kulke D,
( 2020 Dec ) International journal for parasitology. Drugs and drug resistance

A microbial metabolite synergizes with endogenous serotonin to trigger C. elegans reproductive behavior
Chen YC, Seyedsayamdost MR, Ringstad N,
( 2020 Dec 1 ) Proceedings of the National Academy of Sciences of the United States of America

Natural variation in the sequestosome-related gene, sqst-5, underlies zinc homeostasis in Caenorhabditis elegans
Evans KS, Zdraljevic S, Stevens L, Collins K, Tanny RE, Andersen EC,
( 2020 Nov ) PLoS genetics

Caenorhabditis elegans dauers vary recovery in response to bacteria from natural habitat
Bubrig LT, Sutton JM, Fierst JL,
( 2020 Sep ) Ecology and evolution

Stoichiometric interactions explain spindle dynamics and scaling across 100 million years of nematode evolution
Farhadifar R, Yu CH, Fabig G, Wu HY, Stein DB, Rockman M, Müller-Reichert T, Shelley MJ, Needleman DJ,
( 2020 Sep 23 ) eLife

A Natural Mutational Event Uncovers a Life History Trade-Off via Hormonal Pleiotropy
Billard B, Vigne P, Braendle C,
( 2020 Nov 2 ) Current biology : CB

PhenoMIP: High-Throughput Phenotyping of Diverse Caenorhabditis elegans Populations via Molecular Inversion Probes
Mok C, Belmarez G, Edgley ML, Moerman DG, Waterston RH,
( 2020 Nov 5 ) G3 (Bethesda, Md.)

Quantitative benzimidazole resistance and fitness effects of parasitic nematode beta-tubulin alleles
Dilks CM, Hahnel SR, Sheng Q, Long L, McGrath PT, Andersen EC,
( 2020 Dec ) International journal for parasitology. Drugs and drug resistance

Natural variation in a glucuronosyltransferase modulates propionate sensitivity in a C. elegans propionic acidemia model
Na H, Zdraljevic S, Tanny RE, Walhout AJM, Andersen EC,
( 2020 Aug ) PLoS genetics

A broad mutational target explains a fast rate of phenotypic evolution
Besnard F, Picao-Osorio J, Dubois C, Félix MA,
( 2020 Aug 27 ) eLife

Nongenetic inheritance and multigenerational plasticity in the nematode C. elegans
Baugh LR, Day T,
( 2020 Aug 25 ) eLife

Remembering your enemies: mechanisms of within-generation and multigenerational immune priming in Caenorhabditis elegans
Willis AR, Sukhdeo R, Reinke AW,
( 2020 Aug 7 ) The FEBS journal

The nematode Caenorhabditis elegans and the terrestrial isopod Porcellio scaber likely interact opportunistically
Archer H, Deiparine S, Andersen EC,
( 2020 ) PloS one

The plant terpenoid carvone is a chemotaxis repellent for C. elegans
Ellington C, Hayden A, LaGrange Z, Luccioni M, Osman M, Ramlan L, Vogt M, Guha S, Goodman M, O'Connell L,
( 2020 Mar 13 ) microPublication biology

Predicting gene essentiality in Caenorhabditis elegans by feature engineering and machine-learning
Campos TL, Korhonen PK, Sternberg PW, Gasser RB, Young ND,
( 2020 ) Computational and structural biotechnology journal

The Ancestral Caenorhabditis elegans Cuticle Suppresses rol-1
Noble LM, Miah A, Kaur T, Rockman MV,
( 2020 Jul 7 ) G3 (Bethesda, Md.)

The Gene scb-1 Underlies Variation in Caenorhabditis elegans Chemotherapeutic Responses
Evans KS, Andersen EC,
( 2020 Jul 7 ) G3 (Bethesda, Md.)

Genetic Variation in Caenorhabditis elegans Responses to Pathogenic Microbiota
Huang Y, Kammenga JE,
( 2020 Apr 24 ) Microorganisms

Evolution and Developmental System Drift in the Endoderm Gene Regulatory Network of Caenorhabditis and Other Nematodes
Ewe CK, Torres Cleuren YN, Rothman JH,
( 2020 ) Frontiers in cell and developmental biology

Unexpected cell type-dependent effects of autophagy on polyglutamine aggregation revealed by natural genetic variation in C. elegans
Alexander-Floyd J, Haroon S, Ying M, Entezari AA, Jaeger C, Vermulst M, Gidalevitz T,
( 2020 Feb 24 ) BMC biology

The evolution of parasite host range in heterogeneous host populations
Gibson AK, Baffoe-Bonnie H, Penley MJ, Lin J, Owens R, Khalid A, Morran LT,
( 2020 Jun ) Journal of evolutionary biology

Interspecific Variation in Nematode Responses to Metals
Heaton A, Faulconer E, Milligan E, Kroetz MB, Weir SM, Glaberman S,
( 2020 May ) Environmental toxicology and chemistry

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans
Snoek BL, Sterken MG, Hartanto M, van Zuilichem AJ, Kammenga JE, de Ridder D, Nijveen H,
( 2020 Jan 1 ) Database : the journal of biological databases and curation

Diversification of the Caenorhabditis heat shock response by Helitron transposable elements
Garrigues JM, Tsu BV, Daugherty MD, Pasquinelli AE,
( 2019 Dec 11 ) eLife

Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations
Crombie TA, Zdraljevic S, Cook DE, Tanny RE, Brady SC, Wang Y, Evans KS, Hahnel S, Lee D, Rodriguez BC, Zhang G, van der Zwagg J, Kiontke K, Andersen EC,
( 2019 Dec 3 ) eLife

Natural Variation in a Dendritic Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide Expression
Beets I, Zhang G, Fenk LA, Chen C, Nelson GM, Félix MA, de Bono M,
( 2020 Jan 8 ) Neuron

Transcriptional variation and divergence of host-finding behaviour in Steinernema carpocapsae infective juveniles
Warnock ND, Cox D, McCoy C, Morris R, Dalzell JJ,
( 2019 Nov 21 ) BMC genomics

A fln-2 mutation affects lethal pathology and lifespan in C. elegans
Zhao Y, Wang H, Poole RJ, Gems D,
( 2019 Nov 8 ) Nature communications

Defects in mating behavior and tail morphology are the primary cause of sterility in Caenorhabditis elegans males at high temperature
Nett EM, Sepulveda NB, Petrella LN,
( 2019 Dec 18 ) The Journal of experimental biology

WormBase: a modern Model Organism Information Resource
Harris TW, Arnaboldi V, Cain S, Chan J, Chen WJ, Cho J, Davis P, Gao S, Grove CA, Kishore R, Lee RYN, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Rodgers FH, Russell M, Schindelman G, Auken KV, Wang Q, Williams G, Wright AJ, Yook K, Howe KL, Schedl T, Stein L, Sternberg PW,
( 2020 Jan 8 ) Nucleic acids research

Tightly linked antagonistic-effect loci underlie polygenic phenotypic variation in C. elegans
Bernstein MR, Zdraljevic S, Andersen EC, Rockman MV,
( 2019 Oct ) Evolution letters

Accurate Allele Frequencies from Ultra-low Coverage Pool-Seq Samples in Evolve-and-Resequence Experiments
Tilk S, Bergland A, Goodman A, Schmidt P, Petrov D, Greenblum S,
( 2019 Dec 3 ) G3 (Bethesda, Md.)

How Weird is The Worm? Evolution of the Developmental Gene Toolkit in Caenorhabditis elegans
Baker EA, Woollard A,
( 2019 Sep 28 ) Journal of developmental biology

Newly Identified Nematodes from Mono Lake Exhibit Extreme Arsenic Resistance
Shih PY, Lee JS, Shinya R, Kanzaki N, Pires-daSilva A, Badroos JM, Goetz E, Sapir A, Sternberg PW,
( 2019 Oct 7 ) Current biology : CB

Selection and gene flow shape niche-associated variation in pheromone response
Lee D, Zdraljevic S, Cook DE, Frézal L, Hsu JC, Sterken MG, Riksen JAG, Wang J, Kammenga JE, Braendle C, Félix MA, Schroeder FC, Andersen EC,
( 2019 Oct ) Nature ecology & evolution

Population Selection and Sequencing of Caenorhabditis elegans Wild Isolates Identifies a Region on Chromosome III Affecting Starvation Resistance
Webster AK, Hung A, Moore BT, Guzman R, Jordan JM, Kaplan REW, Hibshman JD, Tanny RE, Cook DE, Andersen E, Baugh LR,
( 2019 Oct 7 ) G3 (Bethesda, Md.)

Extensive intraspecies cryptic variation in an ancient embryonic gene regulatory network
Torres Cleuren YN, Ewe CK, Chipman KC, Mears ER, Wood CG, Al-Alami CEA, Alcorn MR, Turner TL, Joshi PM, Snell RG, Rothman JH,
( 2019 Aug 15 ) eLife

A new reference genome sequence for Caenorhabditis elegans?
Howe KL,
( 2019 Sep ) Lab animal

Natural Variation and Genetic Determinants of Caenorhabditis elegans Sperm Size
Gimond C, Vielle A, Silva-Soares N, Zdraljevic S, McGrath PT, Andersen EC, Braendle C,
( 2019 Oct ) Genetics

Fast genetic mapping of complex traits in C. elegans using millions of individuals in bulk
Burga A, Ben-David E, Lemus Vergara T, Boocock J, Kruglyak L,
( 2019 Jun 18 ) Nature communications

A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans
Brady SC, Zdraljevic S, Bisaga KW, Tanny RE, Cook DE, Lee D, Wang Y, Andersen EC,
( 2019 Aug ) Genetics

Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans
Kim C, Kim J, Kim S, Cook DE, Evans KS, Andersen EC, Lee J,
( 2019 Jun ) Genome research

Recompleting the Caenorhabditis elegans genome
Yoshimura J, Ichikawa K, Shoura MJ, Artiles KL, Gabdank I, Wahba L, Smith CL, Edgley ML, Rougvie AE, Fire AZ, Morishita S, Schwarz EM,
( 2019 Jun ) Genome research

Comparative genomics of 10 new Caenorhabditis species
Stevens L, Félix MA, Beltran T, Braendle C, Caurcel C, Fausett S, Fitch D, Frézal L, Gosse C, Kaur T, Kiontke K, Newton MD, Noble LM, Richaud A, Rockman MV, Sudhaus W, Blaxter M,
( 2019 Apr ) Evolution letters

Natural variation in C. elegans arsenic toxicity is explained by differences in branched chain amino acid metabolism
Zdraljevic S, Fox BW, Strand C, Panda O, Tenjo FJ, Brady SC, Crombie TA, Doench JG, Schroeder FC, Andersen EC,
( 2019 Apr 8 ) eLife

Genome-wide Approaches to Investigate Anthelmintic Resistance
Doyle SR, Cotton JA,
( 2019 Apr ) Trends in parasitology

Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis
Beltran T, Barroso C, Birkle TY, Stevens L, Schwartz HT, Sternberg PW, Fradin H, Gunsalus K, Piano F, Sharma G, Cerrato C, Ahringer J, Martínez-Pérez E, Blaxter M, Sarkies P,
( 2019 Mar 25 ) Developmental cell

Adult Influence on Juvenile Phenotypes by Stage-Specific Pheromone Production
Werner MS, Claaßen MH, Renahan T, Dardiry M, Sommer RJ,
( 2018 Dec 21 ) iScience

Extreme allelic heterogeneity at a Caenorhabditis elegans beta-tubulin locus explains natural resistance to benzimidazoles
Hahnel SR, Zdraljevic S, Rodriguez BC, Zhao Y, McGrath PT, Andersen EC,
( 2018 Oct ) PLoS pathogens

Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses
Evans KS, Brady SC, Bloom JS, Tanny RE, Cook DE, Giuliani SE, Hippleheuser SW, Zamanian M, Andersen EC,
( 2018 Dec ) Genetics

Changes to social feeding behaviors are not sufficient for fitness gains of the Caenorhabditis elegans N2 reference strain
Zhao Y, Long L, Xu W, Campbell RF, Large EE, Greene JS, McGrath PT,
( 2018 Oct 17 ) eLife

From "the Worm" to "the Worms" and Back Again: The Evolutionary Developmental Biology of Nematodes
Haag ES, Fitch DHA, Delattre M,
( 2018 Oct ) Genetics

A natural variant and engineered mutation in a GPCR promote DEET resistance in C. elegans
Dennis EJ, Dobosiewicz M, Jin X, Duvall LB, Hartman PS, Bargmann CI, Vosshall LB,
( 2018 Oct ) Nature

Caenorhabditis elegans as an emerging model system in environmental epigenetics
Weinhouse C, Truong L, Meyer JN, Allard P,
( 2018 Aug ) Environmental and molecular mutagenesis

Proteomic and evolutionary analyses of sperm activation identify uncharacterized genes in Caenorhabditis nematodes
Kasimatis KR, Moerdyk-Schauwecker MJ, Timmermeyer N, Phillips PC,
( 2018 Aug 7 ) BMC genomics

Natural Genetic Variation in a Multigenerational Phenotype in C. elegans
Frézal L, Demoinet E, Braendle C, Miska E, Félix MA,
( 2018 Aug 20 ) Current biology : CB

Linking Genomic and Metabolomic Natural Variation Uncovers Nematode Pheromone Biosynthesis
Falcke JM, Bose N, Artyukhin AB, Rödelsperger C, Markov GV, Yim JJ, Grimm D, Claassen MH, Panda O, Baccile JA, Zhang YK, Le HH, Jolic D, Schroeder FC, Sommer RJ,
( 2018 Jun 21 ) Cell chemical biology

Hawaiian Drosophila as an Evolutionary Model Clade: Days of Future Past
O'Grady P, DeSalle R,
( 2018 May ) BioEssays : news and reviews in molecular, cellular and developmental biology

A Model for Evolutionary Ecology of Disease: The Case for Caenorhabditis Nematodes and Their Natural Parasites
Gibson AK, Morran LT,
( 2017 Dec ) Journal of nematology

An Integrated Systems Genetics and Omics Toolkit to Probe Gene Function
Li H, Wang X, Rukina D, Huang Q, Lin T, Sorrentino V, Zhang H, Bou Sleiman M, Arends D, McDaid A, Luan P, Ziari N, Velázquez-Villegas LA, Gariani K, Kutalik Z, Schoonjans K, Radcliffe RA, Prins P, Morgenthaler S, Williams RW, Auwerx J,
( 2018 Jan 24 ) Cell systems

WormBase 2017: molting into a new stage
Lee RYN, Howe KL, Harris TW, Arnaboldi V, Cain S, Chan J, Chen WJ, Davis P, Gao S, Grove C, Kishore R, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Rodgers F, Russell M, Schindelman G, Tuli MA, Van Auken K, Wang Q, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW,
( 2018 Jan 4 ) Nucleic acids research

Polygenicity and Epistasis Underlie Fitness-Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel
Noble LM, Chelo I, Guzella T, Afonso B, Riccardi DD, Ammerman P, Dayarian A, Carvalho S, Crist A, Pino-Querido A, Shraiman B, Rockman MV, Teotónio H,
( 2017 Dec ) Genetics

Why do Individuals Differ in Viral Susceptibility? A Story Told by Model Organisms
van Sluijs L, Pijlman GP, Kammenga JE,
( 2017 Sep 30 ) Viruses

Natural diversity facilitates the discovery of conserved chemotherapeutic response mechanisms
Zdraljevic S, Andersen EC,
( 2017 Dec ) Current opinion in genetics & development

MIP-MAP: High-Throughput Mapping of Caenorhabditis elegans Temperature-Sensitive Mutants via Molecular Inversion Probes
Mok CA, Au V, Thompson OA, Edgley ML, Gevirtzman L, Yochem J, Lowry J, Memar N, Wallenfang MR, Rasoloson D, Bowerman B, Schnabel R, Seydoux G, Moerman DG, Waterston RH,
( 2017 Oct ) Genetics

The genetic basis of natural variation in a phoretic behavior
Lee D, Yang H, Kim J, Brady S, Zdraljevic S, Zamanian M, Kim H, Paik YK, Kruglyak L, Andersen EC, Lee J,
( 2017 Aug 17 ) Nature communications

Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons
Zdraljevic S, Strand C, Seidel HS, Cook DE, Doench JG, Andersen EC,
( 2017 Jul ) PLoS genetics

A maternal-effect selfish genetic element in Caenorhabditis elegans
Ben-David E, Burga A, Kruglyak L,
( 2017 Jun 9 ) Science (New York, N.Y.)

Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species
Laricchia KM, Zdraljevic S, Cook DE, Andersen EC,
( 2017 Sep 1 ) Molecular biology and evolution

Regulatory changes in two chemoreceptor genes contribute to a Caenorhabditis elegans QTL for foraging behavior
Greene JS, Dobosiewicz M, Butcher RA, McGrath PT, Bargmann CI,
( 2016 Nov 28 ) eLife

Correlations of Genotype with Climate Parameters Suggest Caenorhabditis elegans Niche Adaptations
Evans KS, Zhao Y, Brady SC, Long L, McGrath PT, Andersen EC,
( 2017 Jan 5 ) G3 (Bethesda, Md.)